PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BL_00160D0BD.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 46aa    MW: 5573.28 Da    PI: 9.0415
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BL_00160D0BD.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR137.57.5e-12445142
                   FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkre 42
                           +fYn+YA e GFsvrks+ +    n+ i+ r+ vCs++g+re
  Traes_4BL_00160D0BD.1  4 EFYNKYALEKGFSVRKSYVEWDGSNKYIILRKIVCSRQGFRE 45
                           6***************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-9445IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 46 aa     Download sequence    Send to blast
EGYEFYNKYA LEKGFSVRKS YVEWDGSNKY IILRKIVCSR QGFRED
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703062e-70HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466791.11e-16hypothetical protein SORBIDRAFT_01g014270
RefseqXP_014751141.19e-17PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLW5H8216e-27W5H821_WHEAT; Uncharacterized protein
STRINGSb01g014270.13e-16(Sorghum bicolor)
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]